CDS

Accession Number TCMCG057C20675
gbkey CDS
Protein Id XP_018483975.1
Location join(39905739..39905810,39905953..39906331,39906493..39906627,39906725..39906900,39907290..39907691,39907815..39907973,39908066..39908557,39908953..39909090,39909265..39909908,39910004..39910181)
Gene LOC108854807
GeneID 108854807
Organism Raphanus sativus

Protein

Length 924aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018628473.1
Definition PREDICTED: E3 ubiquitin-protein ligase HOS1 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category S
Description Nuclear pore complex assembly
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K16278        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009409        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009966        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010228        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0010646        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0023051        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGACACGAACGGCTATTCCTCCGCCGCTAGATCGATAAATCTTCCCGATTACACTAGCAAACCTGTTCAGGAGGCGTTAATGCACTTGGCATCCATAAACCTCAGAGATCTCTGTAACGAGGCCAAGGTCGAGCGTTGCCGCGCCACCAGAGACCTGACGAGCTGTGGGAGATCCGTTCACCATGCGTTGAACCCGTGTGGACATGCTTCCCTGTGCGCAGAGTGTTGCCAGAGGTTTGATCTTTGTCCAATCTGTAGAAGTCAGCTGCTACCATCAAGAACTGGTGATAGACTTCGTCTCCGTCTCTACTATGAGTGTGTTCAAGCTGGTTTAATCTCCTCACCAACACATGAAGATGAGGATGAGGATGAACATGCTGATGTTCATCGCCTTTATTCTCTCTTCGATGTGGCCATGAACAACAATTTGGTGTCTGTGGTTTGCCTTTATATCACCAATGTGTGTATGGATGAGGCAGCTGTATCTAGTGACCCGGTCATTGCTTTCTTGCTGGATGAAGTTGTTGTCAAAGATTGGGTCAAGCGTACATTCCGGACCATCTTAGCTGAGCTTCAAGAAATCTATCGGCTTGAGACGAAAGAGATGCAAGCGTGGTTAGATAAGCTATTGAAGAGTTCAAAACAAGTGGCTGGCGTATGTAGTGTGCTTGAAGTTATGGAGTCGGCTTTTAAGGGCTCTGTTTCACCTCAGCTTCAAGACGTGCAGAAGCTTAAGGAGAACATTGGAAAAACAAAGCAGCATCTGGAAATTATGATCTGGTGCATAAGACACGGATTTCTGGAAGATGTGAGGTCTCGGTATTCTGATTTCAGATCGTGGAAGGCTCTGGTGCTTGAAAGGAAATCAAATGCAATTAAGCGTGCATGGCCTGATGCCGTAGATCAGTCTTCAGATTGCAGTGTACATGGTGGTTCCCTTTTCATCGAGGATGCTTTGGAAAATCTCGAGAGAGAGCCAGAGTACAGTCAAGACATAGGGGCAGATCTAGAAGTTGGATGTTTGCAGAACGATAATAGATCAGTTCTTAGGTCCAAAATAGAGGGAATGTCAGGATCTTACCCATTTGAGAATATTAGAACTGCTGCTGACATACTCTTTTTACAGGGCAGCTCAGATTTGGTTGTTGCTAAGCAAGCCATTTTTCTTTATTACCTGTTTGATCGGCATTGGACTACCCCTGAAAAACATTGGAAGCACATCATAGATGATTTTGCTGCTACCTTTGGCATAACCAGGCATTCCTTGTTGGAGTCTTCTGTATTTTATCTACTAGATGATCCCTCAGAGGAGGCACTCCAGGAAGCTTGTAGGACTCTCCCTGAAATATGTGGTCCAGAAACATATACCAAGGTTGCACAAGTCTTGTTAGAAAGGGAAACCCCTGAAGCAGCTCTTATGGTCTTGCGCTTGTCTGGTCGTGATGGCGTATCAGAATTGGTTTCAGTTGGTGAAGCTGTCACAGCTGTTCGTGTGAGAGTGGAATGTGGTCTTTTGAGTGAAGCATTCACGCACCAAAGGGCACTCTGCCTGAAAGTGAAGGAAAATGAGCTGAAAAATGGAGCTGTGAAACATGCGTCTGATGATCGAGACAGCTTGAGTTGGACGAGATGGATGGAGATACTTGTTAACGAATTTTGCTGTCTGTCTATTAGGAGAAACGTGGTTGATCGAATAATAGAGTTACCGTGGAACCCAGATGAAGAGAAATATCTGCACCGATGCTTATTAGATTCTGCAACTGATGACCCCTCATCAGCTGTGGGTAGTCTTTTGGTTGTCTTCTATCTTCAGCGCTACCGTTACATCCAGGCGTACCAAGTCGATCTTAGGCTCCAGGGAATTGAAGAGGCTTTCTTATCTGAAAATCGAATTGGGGAAGAAGTAATGTCCAGAATGCAATCACAGAGTCACTGGAGGAAAGAGTTAGTTGATAAAGCCATAGATATACTTCCAGCAATTCAGCAGCAGCAAGTCAGATCTGGACAATTTCCTCCAGAGATGGAAGATACCTCTGAAAGTGCTTCAGAAGCAGCAAAAAGCACTGATCTACCTGATGGACAACAACAGCCTGGGATGATTTCTTCTACTAACTCCGTATTTCTACAACGGGCTAAGGACGCTGGCGCTAGAGAGCCAGTGGCGGCTAATAACGGCAGCAGTCCTTTTCAACCCAGTCGTTTGATAGGATCCGCTTCCGTTGATATTTCCCGTGGAAAACTATTTACAAGCGCAAACAGAGGTCAGAAGAGTGAAGTTGGAAGCATAACCAAGGCTCTGAAATTCGGCGAAGTGTCCACAACACCGTTCAAAGATCTGAACAGAACTCGTGGAAACAGCCAGCTCAAGGGAAAAAGAACTGAAGAAACATCTCCAGGAATAAACTTTGATAGATTCACGGAGAATAGCATGAGCTCTCCTTATCTCACAGCTAATAGTCCTGTCGCAATGAAACGAAGCACCACGCATCTCAATGGATCTGCAAAGAAACCGGAATCCACTTTCTTTGGCGGAAGGATGCGACCAGACGGAGAACACCCGACCCAATGGGATGATCCAATGGACATGTCTTCAAGTTTGAAGAACAACAGCAATGTCTTGACCACGGAGAGCAGAAATACAAGTGGCGGATTGAGGTGGCGATCAGATGAAGCAAGCGATGAGGAAGATGAACCCAAGTGGACCATGGAACCGACTATTTCCGGTTCCCTGCCGGGTAAAGGAAGGAGGACCCGTAGATTCGCTGCAAGATGA
Protein:  
MDTNGYSSAARSINLPDYTSKPVQEALMHLASINLRDLCNEAKVERCRATRDLTSCGRSVHHALNPCGHASLCAECCQRFDLCPICRSQLLPSRTGDRLRLRLYYECVQAGLISSPTHEDEDEDEHADVHRLYSLFDVAMNNNLVSVVCLYITNVCMDEAAVSSDPVIAFLLDEVVVKDWVKRTFRTILAELQEIYRLETKEMQAWLDKLLKSSKQVAGVCSVLEVMESAFKGSVSPQLQDVQKLKENIGKTKQHLEIMIWCIRHGFLEDVRSRYSDFRSWKALVLERKSNAIKRAWPDAVDQSSDCSVHGGSLFIEDALENLEREPEYSQDIGADLEVGCLQNDNRSVLRSKIEGMSGSYPFENIRTAADILFLQGSSDLVVAKQAIFLYYLFDRHWTTPEKHWKHIIDDFAATFGITRHSLLESSVFYLLDDPSEEALQEACRTLPEICGPETYTKVAQVLLERETPEAALMVLRLSGRDGVSELVSVGEAVTAVRVRVECGLLSEAFTHQRALCLKVKENELKNGAVKHASDDRDSLSWTRWMEILVNEFCCLSIRRNVVDRIIELPWNPDEEKYLHRCLLDSATDDPSSAVGSLLVVFYLQRYRYIQAYQVDLRLQGIEEAFLSENRIGEEVMSRMQSQSHWRKELVDKAIDILPAIQQQQVRSGQFPPEMEDTSESASEAAKSTDLPDGQQQPGMISSTNSVFLQRAKDAGAREPVAANNGSSPFQPSRLIGSASVDISRGKLFTSANRGQKSEVGSITKALKFGEVSTTPFKDLNRTRGNSQLKGKRTEETSPGINFDRFTENSMSSPYLTANSPVAMKRSTTHLNGSAKKPESTFFGGRMRPDGEHPTQWDDPMDMSSSLKNNSNVLTTESRNTSGGLRWRSDEASDEEDEPKWTMEPTISGSLPGKGRRTRRFAAR